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aracne.networks, a data package containing gene regulatory networks assembled from TCGA data by the ARACNe algorithm24 days ago
Overview of aracne.networks data package | ARACNe networks | Retrieving the networks | Write a network to file | References | Session information
aracne.networks 1.39.1Federico M. Giorgi, Mariano J. Alvarez, Andrea Califanoaracne.networks.Rmd
A short introduction to the corto Package2 months ago
Introduction | Running corto | Correcting with CNV data | References
corto 1.3.1| Daniele Mercatelli^1^, Gonzalo Lopez-Garcia^2^, Federico M. Giorgi^1^ | ^1^Department of Pharmacy and Biotechnology, University of Bologna, Italy | ^2^Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, USAcorto_vignette.Rmd
Vulcan: VirtUaL ChIP-Seq Analysis through Networks7 years ago
Overview of VULCAN | Citation | Installation of vulcan package | Getting started | Running an example VULCAN pipeline | More convenience tools for ChIP-Seq functional data analysis
vulcan 1.35.1Federico M. Giorgi vulcan.Rnw
Vulcan: VirtUaL ChIP-Seq Analysis through Networks, dummy datasets8 years ago
Overview of VULCAN | Citation | Installation of vulcandata package | Getting started | Generate a example annotation file | Access example objects
vulcandata 1.35.1Federico M. Giorgi vulcandata.Rnw